Rodić, Marko V.

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  • Rodić, Marko V. (1)
  • Rodić, Marko, V (1)

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Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine

Radovanović, Lidija; Malenov, Dušan P.; Rodić, Marko, V; Kremenović, Aleksandar; Rogan, Jelena

(Elsevier B.V., 2022)

TY  - JOUR
AU  - Radovanović, Lidija
AU  - Malenov, Dušan P.
AU  - Rodić, Marko, V
AU  - Kremenović, Aleksandar
AU  - Rogan, Jelena
PY  - 2022
UR  - http://TechnoRep.tmf.bg.ac.rs/handle/123456789/4980
AB  - Orange single crystals of new polymeric cobalt(II) complex {[Co(bipy)(H2O)(4)](2)[Co(mu-mell)(H2O)(2)].10H(2)O}(n), 1, were synthesized by slow evaporation method at room temperature (bipy = 2,2 '-bipyridine, mell = hexaanion of mellitic acid) and its crystal structure was determined by single-crystal X-ray diffraction. The complex 1 was characterized based on elemental analysis, FTIR spectroscopy and thermal (TG/DTA) analysis followed by computational analysis of noncovalent interactions and quantum chemical calculations of interaction energies. In 1, two crystallographically different Co(II) atoms adopt a deformed octahedral geometry, while bridging mell acts as a tetrakis monodentate ligand allowing the development of wavy-like anionic chains running along [100] direction. The 3D supramolecular network of 1 is composed of alternating supramolecular and water layers connected by hydrogen bonds. The supramolecular layer is formed of ionic interactions between complex cations and polymeric complex anions, established mainly through O-H...O hydrogen bonds, as well as stacking interactions between bipy ligands, while the water layers are comprised of hydrogen bonded lattice water molecules. Upon heating up to 1200 degrees C in nitrogen and air atmosphere, complex 1 showed multiple-step degradation that resulted in the formation of Co and Co3O4, respectively. Computed Hirshfeld surfaces and 2D fingerprint plots indicated that O-H...O hydrogen bonds are the most dominant in the crystal structure, while the shape index and curvedness mapped on the Hirshfeld surfaces of 1 revealed that stacking interactions have an important role in the stabilization of the crystal packing. Quantum chemical calculations showed that, aside from ionic hydrogen-bonded interaction between cation and anionic polymer, the important role in the stability of supramolecular structure of 1 is played by hydrogen bonds of cation and anionic polymer with lattice water, as well as by stacking interactions between bipy ligands.
PB  - Elsevier B.V.
T2  - Journal of Molecular Structure
T1  - Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine
SP  - 132202
VL  - 1252
DO  - 10.1016/j.molstruc.2021.132202
ER  - 
@article{
author = "Radovanović, Lidija and Malenov, Dušan P. and Rodić, Marko, V and Kremenović, Aleksandar and Rogan, Jelena",
year = "2022",
abstract = "Orange single crystals of new polymeric cobalt(II) complex {[Co(bipy)(H2O)(4)](2)[Co(mu-mell)(H2O)(2)].10H(2)O}(n), 1, were synthesized by slow evaporation method at room temperature (bipy = 2,2 '-bipyridine, mell = hexaanion of mellitic acid) and its crystal structure was determined by single-crystal X-ray diffraction. The complex 1 was characterized based on elemental analysis, FTIR spectroscopy and thermal (TG/DTA) analysis followed by computational analysis of noncovalent interactions and quantum chemical calculations of interaction energies. In 1, two crystallographically different Co(II) atoms adopt a deformed octahedral geometry, while bridging mell acts as a tetrakis monodentate ligand allowing the development of wavy-like anionic chains running along [100] direction. The 3D supramolecular network of 1 is composed of alternating supramolecular and water layers connected by hydrogen bonds. The supramolecular layer is formed of ionic interactions between complex cations and polymeric complex anions, established mainly through O-H...O hydrogen bonds, as well as stacking interactions between bipy ligands, while the water layers are comprised of hydrogen bonded lattice water molecules. Upon heating up to 1200 degrees C in nitrogen and air atmosphere, complex 1 showed multiple-step degradation that resulted in the formation of Co and Co3O4, respectively. Computed Hirshfeld surfaces and 2D fingerprint plots indicated that O-H...O hydrogen bonds are the most dominant in the crystal structure, while the shape index and curvedness mapped on the Hirshfeld surfaces of 1 revealed that stacking interactions have an important role in the stabilization of the crystal packing. Quantum chemical calculations showed that, aside from ionic hydrogen-bonded interaction between cation and anionic polymer, the important role in the stability of supramolecular structure of 1 is played by hydrogen bonds of cation and anionic polymer with lattice water, as well as by stacking interactions between bipy ligands.",
publisher = "Elsevier B.V.",
journal = "Journal of Molecular Structure",
title = "Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine",
pages = "132202",
volume = "1252",
doi = "10.1016/j.molstruc.2021.132202"
}
Radovanović, L., Malenov, D. P., Rodić, M. V., Kremenović, A.,& Rogan, J.. (2022). Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine. in Journal of Molecular Structure
Elsevier B.V.., 1252, 132202.
https://doi.org/10.1016/j.molstruc.2021.132202
Radovanović L, Malenov DP, Rodić MV, Kremenović A, Rogan J. Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine. in Journal of Molecular Structure. 2022;1252:132202.
doi:10.1016/j.molstruc.2021.132202 .
Radovanović, Lidija, Malenov, Dušan P., Rodić, Marko, V, Kremenović, Aleksandar, Rogan, Jelena, "Crystallographic, spectroscopic, thermal and computational studies of polymeric cobalt(II)-mellitate complex with 2,2 '-bipyridine" in Journal of Molecular Structure, 1252 (2022):132202,
https://doi.org/10.1016/j.molstruc.2021.132202 . .

KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE

Radovanović, Lidija; Đorđević, Ivana; Rodić, Marko V.; Rogan, Jelena

(Beograd : Srpsko kristalografsko društvo, 2021)

TY  - CONF
AU  - Radovanović, Lidija
AU  - Đorđević, Ivana
AU  - Rodić, Marko V.
AU  - Rogan, Jelena
PY  - 2021
UR  - http://TechnoRep.tmf.bg.ac.rs/handle/123456789/6725
AB  - Dietil derivat barbiturne kiseline (H2debarb) pripada klasi lekova koji se koriste u lečenju
anksioznosti, epilepsije i nekih psihijatrijskih poremećaja i predstavlja jak donor vodonične veze
preko dve –NH grupe, kao i slab akceptor preko tri karbonilna O-atoma [1]. 2,2′-Dipiridilamin
(dipya) je organska baza sa svojstvom prenosa naelektrisanja koja se može javiti u nekoliko protonovanih oblika i uspostaviti jedan od devet načina koordinacije [2]. Kokristal
(H2debarb)(dipya)2, 1, dobijen je metodom isparavanja rastvarača iz H2O/EtOH reakcione smeše
koja je sadržala Na(Hdebarb) i dipya u molskom odnosu 1:1. Rendgenska strukturna analiza pokazala je da se asimetrična jedinica 1 sastoji od jedne H2debarb i dve dipya jedinke povezane jakim
N/C–H···O/N interakcijama (slika 1). Glavna strukturna karakteristika 1 jeste sloj formiran preko
N/C–H···O/N interakcija, dok su između slojeva uočene slabe π···π interakcije. Izračunate površine elektrostatičkog potencijala molekula 1 pokazale su najelektrofilnije i najnukleofilne delove,
dok su Hiršfildova površina (slika 2) i 2D grafički prikazi otisaka omogućili analizu intermolekulskih interakcija i kvantifikaciju doprinosa različitih intermolekulskih kontakata prisutnih u
kristalnoj strukturi. Kristalografski podaci: C28H30N8O3, Mr = 526,6, trikliničan sistem, prostorna grupa P–1, a =
11,4015(5), b = 12,1485(4), c = 12,1839(5) Å, α = 70,012(3), β = 64,655(4),
γ = 64,500(4) °, V = 1350,68(11) Å3
, Z = 2, F(000) = 556, ρx = 1,295 g cm–3
,
μ(Mo Kα) = 0,088 mm–1
. Utačnjavanje sa F
2
(358 parametara) dalo je R1 = 0,0555,
wR2 = 0,1099, S = 1,029 za sve podatke i R1 = 0,041 za 3835 uočenih refleksija sa
I ≥ 2σ(I).
AB  - Diethyl derivative of barbituric acid (H2debarb), that belongs to a class of drugs used in treatment of anxiety, epilepsy and some psychiatric disorders, is strong hydrogen bond donor via two –
NH groups and weak acceptor through its three carbonyl O atoms [1]. 2,2′-Dipyridylamine (dipya)
is a charge transfer organic base that can exist in several protonation states adopting one of nine
coordination modes [2]. A co-crystal (H2debarb)(dipya)2, 1, was prepared by solvent evaporation
method from the H2O/EtOH reaction mixture containing Na(Hdebarb) and dipya in molar ratio
1:1. The single crystal X-ray analysis revealed that asymmetric unit of 1 is comprised of one
H2debarb and two dipya moieties connected by strong N/C–H···O/N interactions (Figure 1). The
main structural feature is layer formed by N/C–H···O/N interactions, while among the layers the
week π···π stacking interactions were observed. Computed the molecular electrostatic potential
surfaces of 1 revealed the most electrophilic and nucleophilic parts, while the Hirshfeld surfaces
(Figure 2) and 2D fingerprint plots enabled the analysis of intermolecular interactions and quantify
the contribution of various intermolecular contacts present in the crystal structure of 1. Crystal data: C28H30N8O3, Mr = 526.6, triclinic system, space group P–1, a = 11.4015(5), b =
12.1485(4), c = 12.1839(5) Å, α = 70.012(3), β = 64.655(4), γ = 64.500(4) °,
V = 1350.68(11) Å3
, Z = 2, F(000) = 556, ρx = 1.295 g cm–3
, μ(Mo Kα) = 0.088 mm–1
. The refinement on F
2
(358 parameters) yielded R1 = 0.0555, wR2 = 0.1099, S = 1.029 for all data, and R1 =
0.041 for 3835 observed reflections with I ≥ 2σ(I).
PB  - Beograd : Srpsko kristalografsko društvo
C3  - Izvodi radova / XXVII konferencija Srpskog kristalografskog društva, Kragujevac, 16–17. septembar 2021
T1  - KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE
T1  - CRYSTAL STRUCTURE OF 2,2’-DIPYRIDYLAMINE–DIETHYLBARBITURIC ACID CO-CRYSTAL
EP  - 43
SP  - 42
UR  - https://hdl.handle.net/21.15107/rcub_technorep_6725
ER  - 
@conference{
author = "Radovanović, Lidija and Đorđević, Ivana and Rodić, Marko V. and Rogan, Jelena",
year = "2021",
abstract = "Dietil derivat barbiturne kiseline (H2debarb) pripada klasi lekova koji se koriste u lečenju
anksioznosti, epilepsije i nekih psihijatrijskih poremećaja i predstavlja jak donor vodonične veze
preko dve –NH grupe, kao i slab akceptor preko tri karbonilna O-atoma [1]. 2,2′-Dipiridilamin
(dipya) je organska baza sa svojstvom prenosa naelektrisanja koja se može javiti u nekoliko protonovanih oblika i uspostaviti jedan od devet načina koordinacije [2]. Kokristal
(H2debarb)(dipya)2, 1, dobijen je metodom isparavanja rastvarača iz H2O/EtOH reakcione smeše
koja je sadržala Na(Hdebarb) i dipya u molskom odnosu 1:1. Rendgenska strukturna analiza pokazala je da se asimetrična jedinica 1 sastoji od jedne H2debarb i dve dipya jedinke povezane jakim
N/C–H···O/N interakcijama (slika 1). Glavna strukturna karakteristika 1 jeste sloj formiran preko
N/C–H···O/N interakcija, dok su između slojeva uočene slabe π···π interakcije. Izračunate površine elektrostatičkog potencijala molekula 1 pokazale su najelektrofilnije i najnukleofilne delove,
dok su Hiršfildova površina (slika 2) i 2D grafički prikazi otisaka omogućili analizu intermolekulskih interakcija i kvantifikaciju doprinosa različitih intermolekulskih kontakata prisutnih u
kristalnoj strukturi. Kristalografski podaci: C28H30N8O3, Mr = 526,6, trikliničan sistem, prostorna grupa P–1, a =
11,4015(5), b = 12,1485(4), c = 12,1839(5) Å, α = 70,012(3), β = 64,655(4),
γ = 64,500(4) °, V = 1350,68(11) Å3
, Z = 2, F(000) = 556, ρx = 1,295 g cm–3
,
μ(Mo Kα) = 0,088 mm–1
. Utačnjavanje sa F
2
(358 parametara) dalo je R1 = 0,0555,
wR2 = 0,1099, S = 1,029 za sve podatke i R1 = 0,041 za 3835 uočenih refleksija sa
I ≥ 2σ(I)., Diethyl derivative of barbituric acid (H2debarb), that belongs to a class of drugs used in treatment of anxiety, epilepsy and some psychiatric disorders, is strong hydrogen bond donor via two –
NH groups and weak acceptor through its three carbonyl O atoms [1]. 2,2′-Dipyridylamine (dipya)
is a charge transfer organic base that can exist in several protonation states adopting one of nine
coordination modes [2]. A co-crystal (H2debarb)(dipya)2, 1, was prepared by solvent evaporation
method from the H2O/EtOH reaction mixture containing Na(Hdebarb) and dipya in molar ratio
1:1. The single crystal X-ray analysis revealed that asymmetric unit of 1 is comprised of one
H2debarb and two dipya moieties connected by strong N/C–H···O/N interactions (Figure 1). The
main structural feature is layer formed by N/C–H···O/N interactions, while among the layers the
week π···π stacking interactions were observed. Computed the molecular electrostatic potential
surfaces of 1 revealed the most electrophilic and nucleophilic parts, while the Hirshfeld surfaces
(Figure 2) and 2D fingerprint plots enabled the analysis of intermolecular interactions and quantify
the contribution of various intermolecular contacts present in the crystal structure of 1. Crystal data: C28H30N8O3, Mr = 526.6, triclinic system, space group P–1, a = 11.4015(5), b =
12.1485(4), c = 12.1839(5) Å, α = 70.012(3), β = 64.655(4), γ = 64.500(4) °,
V = 1350.68(11) Å3
, Z = 2, F(000) = 556, ρx = 1.295 g cm–3
, μ(Mo Kα) = 0.088 mm–1
. The refinement on F
2
(358 parameters) yielded R1 = 0.0555, wR2 = 0.1099, S = 1.029 for all data, and R1 =
0.041 for 3835 observed reflections with I ≥ 2σ(I).",
publisher = "Beograd : Srpsko kristalografsko društvo",
journal = "Izvodi radova / XXVII konferencija Srpskog kristalografskog društva, Kragujevac, 16–17. septembar 2021",
title = "KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE, CRYSTAL STRUCTURE OF 2,2’-DIPYRIDYLAMINE–DIETHYLBARBITURIC ACID CO-CRYSTAL",
pages = "43-42",
url = "https://hdl.handle.net/21.15107/rcub_technorep_6725"
}
Radovanović, L., Đorđević, I., Rodić, M. V.,& Rogan, J.. (2021). KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE. in Izvodi radova / XXVII konferencija Srpskog kristalografskog društva, Kragujevac, 16–17. septembar 2021
Beograd : Srpsko kristalografsko društvo., 42-43.
https://hdl.handle.net/21.15107/rcub_technorep_6725
Radovanović L, Đorđević I, Rodić MV, Rogan J. KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE. in Izvodi radova / XXVII konferencija Srpskog kristalografskog društva, Kragujevac, 16–17. septembar 2021. 2021;:42-43.
https://hdl.handle.net/21.15107/rcub_technorep_6725 .
Radovanović, Lidija, Đorđević, Ivana, Rodić, Marko V., Rogan, Jelena, "KRISTALNA STRUKTURA KOKRISTALA 2,2’-DIPIRIDILAMIN–DIETIL-BARBITURNE KISELINE" in Izvodi radova / XXVII konferencija Srpskog kristalografskog društva, Kragujevac, 16–17. septembar 2021 (2021):42-43,
https://hdl.handle.net/21.15107/rcub_technorep_6725 .